CSSS 2006 Noncoding RNA Structure

Lecturer: Peter Stadler



Resources (an evolving list):

Background
  • An Expanding Universe of Noncoding RNAs , Gisela Storz
  • The Functional Genomics of Noncoding RNA , John S. Mattick

    CS Methods

  • Computational Chemistry with RNA Secondary Structures Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler Kemija u indistriji 53: 315-322 (2004).
  • Fast and reliable prediction of noncoding RNAs Stefan Washietl, Ivo L. Hofacker, Peter F. Stadler Proc.Natl.Acad.Sci.USA (2005)

    Some more Bio-Stuff

  • Evolutionary Patterns of Non-Coding RNAs A.F. BompfŸnewerer, Ch. Flamm, C. Fried, G. Fritzsch, I.L. Hofacker, J. Lehmann, K. Missal, A. Mosig, B. MŸller, S.J. Prohaska, B.M.R. Stadler, P.F. Stadler, A. Tanzer, S. Washietl, Ch. Witwer Th.Biosci. 123: 301-369 (2005)
  • Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome Stefan Washietl, Ivo L. Hofacker, Melanie Lukasser, Alexander HŸttenhofer, Peter F. Stadler Nature Biotech. 23: 1383-1390 (2005).